IMHO neither one is a great alternative. I try to give Chicago a wide berth if I can manage it. (On the other hand, I-90 is far superior to going on the surface streets, many of which ban large vehicles.) I-80 to I-39 would be my choice in that area if going somewhat near Chicago.
More generally, I prefer to go through Michigan, probably going through Ontario from Niagara Falls towards Flint, and then either take the SS Badger from Ludington to Manitowoc (not inexpensive, admittedly) or go up to the upper peninsula and take US 2 across towards wherever. The upper peninsula doesn't get one back to I-90 very readily, but depending on where you're going I-94 or US-2 may be viable alternatives heading west.