Bend
Now that I understand better your situation (guess I should have read your signature)
Directly connecting the Array to the battery could be a solution to getting your battery charged a bit quicker - I was a bit concerned if you were running a high voltage array (as I do) with a direct connection to the battery. My rigs got 550watts at 40Vdc which can/will destroy a battery in no time if directly connected to a small battery.
As RJ said a jumper cable to the trolling battery from the house battery will indeed help to get it topped up after a day of fishing.
Have not seen a Helitrope for several years now (as I remember they were AM Solar's controller of choice a few years back) not sure if it requires a battery connection before an array connection - check it out before disconnecting your house battery from the controller.