Emissions ReadingI was leery of the emissions setup on the pre-SCR 6.7s because of excessive EGR and DPF regens. I think the newer ones just run a lot cleaner with the addition of DEF, and get better mileage too.
Now you're comparing the early 6.7 to the 5.9, which is a whole different question. The newer trucks are nicer, have more power and a 6 speed, but the emissions are more problematic. If you aren't in an emission testing area you do have the option of deleting a 6.7 to avoid those issues, but there are legal and environmental drawbacks to that. Nonetheless, a lot of guys do it once out of warranty. VW even does it for you without voiding the warranty...