The Green LIght in the roof????? Do you have a carrier AirV air conditioners?
Otherwise the furnace is normally located at floor level not roof. nothing on the roof or in the roof should matter.
Now the Carrier (And I have no doubt some others) uses a I/R remote and teh thermostat is in the air conditioner housing. This one has lights in the "Roof" to indicate some things like 120vac is present and 12vdc as well. But that's about all (or and an error indicator for the A/C).
The furnace is controlled by a relay.. ON/OFF like a toggle switch but operated by the A/C control system. Mine is gone.
So I now have an advanced Furnace control system.. It helps seriously
IT consists of a Toggle switch.. a common Mechenical wall thermostat of the mercury free type. an LED (indicates with the switch is on) and resistor (To protect the LED)
WHat did it show... it showed that I had a short in the blower motor system. Still have not tracked it down but I know what to do about it.
How the furnace works
T-Stat calls for heat
Control board starts the blower
When air flow is strong enough the sail switch sails and signals the control board which then opens the gas valve and starts sparking to fire it up.
After a brief period of sparking (NOTE THIS is the single wire ignition system) the control switches to SENSE mode looking for just under 1/2 volt (0.480) on the same wire that a fraction of a second ago had about 1,000 volts on it. (WOW)
the multi-wire systems sense all the time. and use a different wire for SPARK.
IF flame is sensed (0.480 volt) then the burner continues operation till the T-Stat says "Warm enough" then the burner shuts down. blower continues a bit then it shuts down.
Possible issues include many logical things but what happens if the change from SPARK to SENSE goes at the wrong time and the SENSE chip gets socked with 1000 volt spark voltage.... Pop goes the sensor.
DINOSAUR Boards put a over voltage arrester on teh board Atwood did not.
Home was where I park it. but alas the.
2005 Damon Intruder 377 Alas declared a total loss
after a semi "nicked" it. Still have the radios
Kenwood TS-2000, ICOM ID-5100, ID-51A+2, ID-880 REF030C most times