Some points to make here.
Are you certain the Costco batteries are 115ah at 20 hour rate and true deep cycle. Not deep cycle/starting, not 115 reserve power, generally wouldn't ever be rated with cold cranking amps if true deep cycle. I have a Costco 12v group 27 alleged deep cycle battery/starting that was rated over 100ah (don't remember exactly). Did a capacity test on it when it had a few cycles on it and it tested closer to 85ah, which is typical for that kind of battery. After a bunch of calls, I got through to the manufacturer, and they said it was rated at the 100 hour rate. which makes the capacity much higher. Definitely cheating as everyone uses the 20 amp rating.
It is also very rare to find a high quality true deep cycle in the 12v style. Crown and Trojan make some, but almost all the others are not all that great, and even an SCS200 12v Trojan has 1/2 the cycle life of the Trojan golf cart 6v batteries.
It is also very rare to find a NON true deep cycle 6v GC2 battery, as they are all designed for golf carts. The manufacturers focus on durability and capacity for that market.
The statement about the 6v charging faster, IMO, is backwards. The 12v batteries that I have seen usually charge considerably faster than the GC2 6 volts. We had both in our Roadtrek for quite a while, all were Trojans and the difference was pretty large. The 6v will also give up the charge a bit slower, so more voltage drop at very high amp draws. For most this is not an issue, as 220ah of 6v batteries will run a 100 amp load OK down to about 50% state of charge.
Most GC2 batteries will have around double the cycle life of most the 12v ones. (there are always exceptions)
Arguing over the 12v parallel vs 6v series wiring is kind of moot. With two 12v in series, they can see different currents based on their internal variations, as they see the same voltage. With two 6v in series, they can see different voltages based on their internal variations, as they see the same current. Both have a mismatches but of different types, and both mismatches give uneven charging. That said, the 6v batteries, especially if they come from the same manufacturing run, tend to match much better than the 12v ones do. It makes sense as 12v batteries are commonly used alone, and golf cart 6v batteries are almost always used in multiples, so they have to match better.
Personally, I would never use two 12v if two 6v would fit. If Costco is carrying the Interstate GC2 6v batteries (they have switched to Interstate on everything, I think) they are likely pretty good batteries, at least the used to be. Others have had decent luck with the Walmart or Sam's club 6v batteries.