This morning I was able to adjust the valves to .004, cold. I loosen the lock nut on the valves and verified that I could push each of the valves open easily. One of the valves on the bad cylinder was really tight, I think it was intake but not sure. Still wasn't running, but the spark plug on the non running cylinder is definitely getting wet with fuel now.
I started messing with the plug wires. I found that if I used the long wire meant for the left cylinder on the right cylinder, it didn't work either. But the short wire for the right cylinder was too short to hook on the left. So I removed the coil and moved it over so the short wire could reach the left cylinder and it ran! But either cylinder will only run off of the wire on one side of the coil. So I suspect I have a bad coil and at least one bad wire. I'm going to pickup a new coil and wires.
I still have the other noise to figure out next.