Having gone through a new roof with “Bubbles” I will offer a few tips.
1. Take very good photos of everyone of them...using a ruler or yardstick for reference.
2. Document every phone call, conversation, including date, time,and names, and what was discussed.
3. Have every inspection documented.
4. Call the manufacturer direct and relate your experience with your dealer.
5. If necessary get a second or third inspection and recommendations for repair.
Mine was replaced under warranty at a cost of $8000.00 , no cost to me.
Most will not get better with time and soon a small problem will just turn into a nightmare. I have seen many RV’s going down the road with the roof material ballooned up 2-3 feet above the roof due to the suction of the air passing over the roof.