It is possible that you have a plugged up HVAC condensation pan. That is the bottom of the HVAC unit on the roof. If so the water gets into the roof where the HVAC is cut into the roof opening. That requires cleaning the condensation tray and making sure the weep holes are open so the water,(condensation), gets out and on to the roof and off via the low side your RV is leaning to. There is a gasket around the opening, for the HVAC inlet of air, that has to be snug,( via the four inside screws), which are inside the RV either above pop out plastic plugs, or above the entire plastic cover. If they are real loose, just snug them to the first feel of them not being loose. Clockwise that is to tighten. Once you have resolved the problem, you have to address the wet areas by treating the area by drying and then use a mold killer so it is not allowed to get toxic mold growing due to wetness. Good luck!