A new fuel filter will never hurt any engine. With diesel, it is particularly important to have a clean fuel filter.
Check the transmission fluid. If it looks dirty, then have all of it changed. For my Ford, I remove one of the oil cooler lines, and put it into a bucket, run the engine about 2-3 minutes to pump out most of the fluid from the transmission reservoir and torque converter. Then removing the pan and changing the filter in there is really easy. I found that the magnet inside the pan also has a lot of metal shavings on it when the RV was 15,000 miles on it.
If you are running 200F while not towing, then a larger transmission cooler will really help things out. . . If you live where it snows, then a self regulating cooler is required, where it would be bypassed until above around 180F.
Good luck,
Fred.