4" interference isn't exactly in the "just slam it closed range". Also, should you need to replace the jacks themselves, you will find they are about 3" longer at the bottom, so now you would really be dragging them if moved down.
Most of the retailers warn that the new motors are taller and may not clear the overhang. They also warn that the new motors do not have an overload clutch, that function having been moved inside the electronics of the new controller - so be careful at the ends of travel.
Bigfoot 10.4E, 2015 F350 6.7L DRW 2WD, Autoflex Ultra Air Ride rear suspension, Hellwig Bigwig sway bars front and rear