first off thanks for the help, yesterday morning I got the window cleaned up and reinstalled. it sure was difficult to get the silicone off the window frame and fiberglass. Butyl tape went on easy enough and appeared to fill the gap between the window frame and coach. I applied a bead of caulking around the frame.
We had a couple of rain storms last night and I have not been out this morning to check, I really hope the window got it.
I also pulled each of the clearance lights down and rechecked, I could not see any issue with any of them.
I have everything ready to go back in as soon as im sure i have got the leak stopped.