http://www.rvtechmag.com/docs/HydroHot_Shop.pdf
Here is the manual if you don't have one. Step 7.9 .
Found this on another forum, seems to be your issue.
There is a thermostat on the incoming (cold) water supply, just before the pipe goes into the boiler tank (low temp cutoff thermostat). As soon as you turn on the hot water in the coach, the pipe cools off, the "Low Temp Cutoff" light on the electronic control board goes out, stir pump starts and interior heat shuts off. Note that the diesel burner switch inside the coach needs to be ON, or the stir pump will not start as designed.
The "stir pump" pumps boiler coolant from bottom front of boiler tank to top back of boiler tank. This "stirs" the hot coolant across the copper coil (that heats the hot water) and across the control thermostat.
If the stir pump is not working correctly, then your Hydro-Hot will not heat water properly. Water will start out hot, then cool off rapidly. There will be several minute delay, before the diesel burner starts, then the hot water will warm up and stay hot.