Be sure to start the engine and run the tranny through the gears as specified or if specified. My tranny had to be replaced at 60K miles. Might have been neglect but seems odd.
Side note. I have had two brake issues with the master cylinder but it was under warranty the first time and turned out to be a recall issue. Just last year the same thing happened at 70K miles and the fixed it under "customer satisfaction" at no charge. I had not expected that. It was the same dealership just by coincidence.